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Why study reptiles and amphibians?

5/30/2026

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I often define myself as a scientist by kinds of questions I ask, so I normally say that I am an integrative evolutionary biologist or physiologist. But another way that you can characterize a scientist is by the type of organisms that they study, and by that criterion, I am definitely a herpetologist. The overwhelming majority of my publications (>95%) are on reptiles or amphibians, and most grad and undergrad students in my lab have studied reptiles and amphibians. So why do I study reptiles and amphibians?
 
            Unlike other vertebrate groups, studying reptiles and amphibians requires a bit of justification. If you study birds, mammals, or “fishes”, usually there is the potential for something that can be applied to humans or one of our food sources, either in the context of agriculture or wildlife and fisheries biology. Reptiles and amphibians are only rarely an important food source, and none have really been domesticated and cultured in captivity like some birds, mammals, and fishes. Hence, the justification for studying reptiles and amphibians usually requires justifying on the basis of basic scientific knowledge that can be gained by studying them. I think that there are at least five reasons for why reptiles and amphibians can make good study systems in organismal biology.
           
One of the reasons that reptiles and amphibians are a good model system is that you can handle most of them safely. Amphibians and reptiles have very few zoonoses, and washing your hands after handling them is usually sufficient to protect against getting sick. As long as you are gentle, most reptiles and amphibians can also be handled without danger to the animal itself (although this can be complicated with some amphibians, and best practices is to have wet hands and/or a barrier like gloves). Most non-venomous squamates (snakes and lizards) can’t really hurt you if they bite you besides drawing a little blood, with the obvious exceptions of the big ones (e.g., pythons, iguanas, monitor lizards). Almost all turtles are capable of delivering a painful bite, and the big ones can do some real damage (such as removing digits), but they are not that flexible and so can generally be handled safely by holding onto the rear margin of the carapace (upper shell) between the two hind legs. Crocodilians are an exception- there is no way to safely handle any species without substantial training. Where I grew up in the Midwest, there were no venomous snakes, and so I grew up catching toads and turtles and snakes. The reason that at child could catch these animals (and grow fascinated with them) is also what makes them great study systems- they can be easy to catch safely, sometimes in large numbers.
 
Another reason for the appeal of reptiles and amphibians as study systems is that they are a vertebrate that can be extremely abundant. Because they are ectothermic and are often small bodied, they can be packed more densely into a landscape than even comparably sized birds or mammals, which must divert most of their energy input into endothermy. In the eastern US, red-backed salamanders (Plethodon cinereus) can be at extremely high densities- I have found over fifty individuals in a half hour of searching, and this was a random site that I was visiting for the first time. In the Midwest, snakes can be present in extremely high numbers- a single afternoon can yield dozens of garter snakes in wet prairies in Iowa or hundreds of ringnecked snakes in Kansas. Anyone who has spent time in the desert southwest has surely noted the abundance of many different species of lizards even in a resource-depauperate aridland. Scientists, particularly those that work in nature with wildlife, are often in a struggle to increase sample size and statistical robustness of results, and reptiles and amphibians are often the best way to get a high sample size for a terrestrial vertebrate.
 
Beyond permitting high sample size, the fact that all reptiles and amphibians (with a few facultative exceptions) are ectotherms means that they represent a very unique style of terrestrial life, compared to birds and mammals. All mammals and birds are limited in the body size and shape that they can evolve based upon the constraint of being endothermic. Surface area to volume relationships means that there is a limit on how small you can be and maintain a body temperature higher than that of the environment. These same constraints also prevent the evolution of body forms with a high surface area to volume ratio, such as very elongate or flattened forms. Hence, within reptiles and amphibians, we have snakes and caecilians and legless lizards, as well as flattened horned toad and softshell turtles. The smallest terrestrial vertebrates are reptiles and amphibians of multiple different lineages. Hence, if you want to understand nearly half of the diversity of tetrapods (tetrapods are basically all terrestrial vertebrates, or all vertebrates excluding “fishes”), studying reptiles and amphibians is the only way to do it.
 
Reptiles and amphibians are also good study systems because they are very sensitive to the environment, and can be bellwethers of environmental disturbance. All reptiles and amphibians are ectotherms, so they are often sensitive to or responsive to environmental shifts in temperature. Many species are habitat specialists, and cannot persist outside of their specialized habitats. Reptiles and amphibians are sensitive to wildlife disease, from two different chytrid diseases that have caused enormous crashes in the biodiversity of salamanders and anurans, to snake fungal disease that is negatively impacting populations of snakes in the US, particularly the eastern US. Moreover, because many are small-bodied and feed upon tiny invertebrates, they can connect parts of the food web that would be otherwise separated. In fact, loss of amphibian communities has been linked to the collapse of other vertebrate taxa, emphasizing their important but environmentally sensitive role in the ecosystem.
 
Finally, studying reptiles and amphibians is useful and interesting because we know so little about them. New species of squamates and amphibians are described at a pace that far outstrips descriptions of new mammals and birds. Some groups like amphisbaenians, scolecophidian snakes, and caecilians, among others, are still quite poorly known, with new families of caecilians discovered in the past couple of decades. One reason that we are discovering many new species is that many are quite cryptic and live in places where they are unlikely to encounter humans, such as the canopy of trees or underground. Because of that, we are also constantly learning new information on the ecology and behavior of reptiles and amphibians. As an example, only a few years ago, researchers discovered that not only do caecilians have post-birth parental care, but the offspring beg to be fed, and the mothers release cloacal milk in response to the begging of their offspring. This observation challenges our notions of when and where elaborate parental care evolved on the tree of life.
 
There are many other reasons to study reptiles and amphibians (e.g,, public health issues around venomous snakes, studying the evolution of toxins and venom). But I wanted to at least give a sampling of why it might be not only interesting, but important, to study these creatures. Reptiles and amphibians are fascinating and cool, and for all of the reasons that they are so appealing to some people, they can make great study systems in integrative and comparative biology.

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Grants don't matter

5/10/2026

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The admittedly provocative title of this post is definitely wrong. Grants matter because they can pay people that work on the grant, and grants provide funds to conduct research. Grants matter for a lot of institutions because they often include “overhead” or “F and A” or “Indirect” funds that essentially pay for the maintenance costs of conducting research at universities. But where I think grants don’t matter, or at least don’t matter as much as they are currently weighted, is in evaluating research quality and productivity.
 
            The only thing that makes what we do science, rather than an expensive hobby, is that the results get shared via scientific publications. Of course, results can also be shared in grey literature like reports, or via database acquisitions, but these are not universally available and so are not the focus of my argument. Hence, the only research that matters for the broader scientific enterprise is research that gets shared with the broader community in scientific publications
 
            My basic argument is that grants are only mediators of research productivity and quality, and are not themselves a type of research product. Grants are frequently important for evaluation of scientists, and at research-intensive institutions, are the most important factors for tenure and promotion. However, the grants only matter for the progression of science if they result in publications. It does not matter how much money you bring in if that money does not result in published research.
 
            Because obtaining grants is so competitive, they can be a signal of research prominence or quality. But grants alone are an imperfect signal for two reasons. First, not all grant funds are equal. Some research funding is more like a contract, rather than the funding of a research program. For example, scientists can be funded for monitoring work that may well be important for informing agency decisions, but is not hypothesis driven and is less likely to result in publications. In my experience, this work is less likely to push science forward, although it can contribute to other important societal outcomes. But for evaluating research quality and productivity, receiving the grant is not a good signal, although the resulting publications would be a good signal. Second, some grants fund specific research programs (e.g., regular NIH and NSF grants), and this work is more likely to be hypothesis driven and advance the scientific enterprise. However, the work has to be published to actually matter, and so we should use the resulting scientific publications to evaluate productivity, rather than simply receiving the grant.
 
            ​There are other reasons to conduct research than advancing knowledge in your field. As mentioned before, monitoring research can be important for a number of reasons. Research can be a crucial part of teaching in labs and field courses, even if the goal is not publications. But then I would argue that this research (and the funding that supports it) is best evaluated as broader impacts or part of teaching, not as a way to evaluate research productivity.
 
            I understand why institutions value the acquisition of external funding for evaluations like tenure and promotion. Requiring all faculty to generate some income for the university in the form of F and A is a great way for the university to recoup salary and startup of faculty. But as an individual faculty member, whether some gets funding or not does not really matter to me for evaluating research productivity. Of course, getting funding might be a good measure of how they support the graduate program, or training of undergraduates, but that is a different type of evaluation. Indeed, research productivity is only one of several evaluation categories to consider for hiring or promotion. However, for evaluating research productivity, I pay attention to the quantity and quality of scientific publications, which is the only real direct evidence of how the research of an individual faculty has influenced their field and contributed to the corpus of human knowledge. 
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Why should you go to scientific conferences?

5/3/2026

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Conferences are expensive and time-consuming. You usually have to travel to get to the conference location, and preparing your talk or poster can take up time that could be used for more tangible tasks like writing papers or grant proposals. So why should you go to conferences? I think it is a good idea to go to conferences because none of us does science in a vacuum, and our work is embedded within the broader context of work done by the community of scientists in our field. Publications are usually published months to years after the research has been completed. Conferences are the best opportunity to take the pulse of the field and see what your colleagues are working on right now. They are also a way to make connections in the field with future colleagues that will be reviewing your grants and papers and might even be future collaborators. Finally, going to conferences is a great way to break out of a mental rut and feel inspired by cool science.
 
            One thing that I don’t do a great deal of during conferences is attend talks. Some of this comes from my upbringing- my family went to church three times a week, which was quite the challenge for a kid who struggled to pay attention. I have developed a bit of an allergy to a full day of sitting and listening to people speak. My ability to sit still and focus has improved a bit as I have moved into middle age, but I still won’t attend more than a couple dozen talks at most. However, I don’t think attending talks is the best or only way to get caught up with colleagues. In fact, I think the best way is to focus on meeting with colleagues that you see once a year, during poster sessions or coffee breaks. This is where you really get to learn what your colleagues have been up to for the past year.
 
            All of the above is not to say that you shouldn’t attend talks- I am definitely inspired every year by cool talks. For me, finding sessions with lots of relevant and exciting talks is the best way to balance socializing and attending talks. I rarely switch sessions, and I try to avoid going to any talks where I am a coauthor (after all, I already know what we did and what we found). Instead, I go to (some) plenaries, best student presentation sessions, and symposia where all the talks are of interest. If I go to a few of those per conference, I almost always see a talk that gets me amped about collaborations or new techniques or exciting new paradigms.
 
            The notion that a conference is all about making and reinforcing connections within the broader community may seem challenging if you are introverted and new to the field. I think one instinct that some folks have is that they want to meet the most famous or influential people at the conference. But keep in mind that those people are often very senior, and meet way too many people for them to remember every brief interaction. Also, those superstars in the field may well be retired or in the twilight of their career if you meet them when you are a grad student. By all means meet the superstars if you have an opportunity, but I have found that the most important and lasting connections are the people closer to my career stage. Some of the postdocs and early-career faculty that I met as a grad student are now the big and senior names in the field, and grad students and postdocs closer to my career stage are now my colleagues and peers that review my work.
 
            At the conference that I attend regularly, I have slowly built up the number of people that I know, so that I am often in conversation with colleagues. I am fairly shy about meeting new people, and it is hard for me to approach someone that I don’t know. For me, being introduced to folks through better connected colleagues was a more comfortable way to start making connections.  If you are new to attending scientific conferences, it is okay to be by yourself or to primarily interact with other members of your lab or people in your program. But be open to meeting new people, and try to put yourself into situations where that will be possible. The more people you can meet and make connections with, the more the conferences will start to feel like a fun reunion rather than an intimidating professional event.
 
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    Author

    Christian L. Cox is faculty at Florida International University. 

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